Bioinformatics and Data Science in Genomic Studies

PROGRAMME

24th November, Thursday (forenoon)
10:00-10:10 Welcome speech
10:10-10:20 Gábor Kardos: Opening speech

 

MODELING, STATISTICAL ANALYSES, MACHINE LEARNING, BIG DATA I.

Chairperson: Gábor Kardos

Keynote presentation (30 minutes + 15 minutes discussion)

10:25-11:10 Katalin Gombos: Synthesis of molecular genetics and bioinformatics to develop clinical diagnostics and surveillance

Short presentations (15 minutes + 5 minutes discussion)

11:10-11:30 Zoltán Rádai: Complex effects of Next Generation Sequencing error sources on the quality of de novo genome assembly

11:30-11:50 Alex Váradi: Effects of genome size and composition and duplicate removal on the results of de novo transcriptome assembly and DGE analysis: an in silico study

11:50-12:10 Otília Menyhart: Preserved correlations identify extracellular matrix organization as a critical factor in pancreatic ductal adenocarcinoma

24th November, Thursday (afternoon)

 

MODELING, STATISTICAL ANALYSES, MACHINE LEARNING, BIG DATA II.

Chairperson: Péter Takács

Keynote presentation (30 minutes + 15 minutes discussion)

13:15-14:00 Serhii Vakal: Why protein folding is not yet solved, and you should be careful when using AlphaFold as a "black box"

Short presentations (15 minutes + 5 minutes discussion)

14:00-14:20 Szonja Anna Kovács: Investigation of predictive biomarkers in cancer patients treated with immune-checkpoint inhibitors

14:20-14:40 János Tibor Fekete: Predictive biomarkers in cancer cell lines

14:40-15:00 Zoltán Pethő: Protein homology modeling as a tool to study intra- and interprotein interactions

25th November, Friday (forenoon)

 

GENOME, PANGENOME, METAGENOME, POPULATION GENETICS, PHYLOGENETICS, PHYLOGENOMICS

Chairperson: Eszter Virág

Keynote presentation (30 minutes + 15 minutes discussion)

10:00-10:45 Péter Oláh: Analysis of whole-genome and marker gene-based cutaneous microbiome signatures in autoimmunity and allergy

Short presentations (15 minutes + 5 minutes discussion)

10:45-11:05 Levente Laczkó: Assessment of the accuracy of plasmid prediction tools using draft genome sequences

11:05-11:25 Valter Péter Pfliegler: Phylogenomics of Saccharomyces yeasts infecting and colonizing humans

11:25-11:45 Eszter Ari: Global map of evolutionary dependencies between antibiotic resistance and virulence genes in E. coli

25th November, Friday (afternoon)

 

TRANSCRIPTOME, PROTEOME, METABOLOME, FUNCTIONAL GENOMICS

Chairperson: Nikoletta Andrea Nagy

Keynote presentation (30 minutes + 15 minutes discussion)

13:00-13:45 Eszter Virág: Time-course gene expression analysis of the effect of SC-CO2 garlic extract encapsulated in nanoscale liposomes

Short presentations (15 minutes + 5 minutes discussion)

13:45-14:05 William Jayasekara Kothalawala: Transcriptomic and cell type enrichment analysis of colorectal cancer by combining multiple independent cohorts

14:05-14:25 Eszter Kaszab: Genetic characterization of probiotic candidate microbial strains

14:25-14:45 Gergely Nagy: Dissecting the cistromes determining bone marrow-derived macrophage identity

14:45-15:05 Gyula Hoffka: Structural analysis of the binding of nirmatrelvir to the SARS-CoV-2 main protease

15:05-15:15 Concluding remarks

 

Program PDF

Abstract book PDF

 

 

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